The Best eCommerce Account Software for 2022

eCommerce accounting is challenging. Luckily, there are accounting software options available to help. Ampla’s list contains the best of them.

Jade Thomas

The backbone of any successful business is how efficiently it handles its accounting. Because accounting is complicated, many companies have their own dedicated internal accounting teams or hire external accountants. 

When running a startup eCommerce business, there are accounting software options available so to help you with your accounting needs for your company, team, or consultant.

While each software has pros and cons, they are all beneficial to keeping your accounting in order.  

What To Look For In eCommerce Accounting Software

You may be familiar with accounting principles for your business, but there are distinctions between regular accounting and eCommerce accounting. For example, calculating the sales tax for out-of-state or international purchases. For this and other reasons, you must use eCommerce accounting software if you have an online business. 

Here are features that you should look for in your eCommerce accounting tool::

Sales Tax Calculation

One of the greatest strengths of running an eCommerce business is that you sell your products globally. But worldwide sales are also a downside when trying to handle your accounting yourself. 

In the United States, the tax laws and regulations are complicated. It’s best to find software that helps to properly calculate the sales tax added to any type of transaction.

Third Party Integration

Third-party integration allows various tools such as payment processors, inventory management systems, and shipping software to sync accurately. This important feature updates translation and dates manually. This capability saves you time and reduces the risks of potentially catastrophic errors occurring from human entry. 

Order Fulfillment

A critical aspect of running an eCommerce business is getting the product to the customer quickly. Your accounting software should do more than keep track of sales and taxes; it should also have order fulfillment features. 

Order fulfillment features allow you to accurately count your product inventory and track the journey of your sold products up to the point of customer delivery. 

Detailed Reports

Highly detailed reports help to highlight areas in your business needing improvement. Instead of spending valuable time collecting this data manually, look for accounting software providing detailed reports. 

These reports should include information such as your income statement, balance sheet, and statement of cash flows. It might also include your total number of orders, total revenue, the average value of each order, and the number of abandoned carts. 

When your accounting software provides granular details, you can make data-driven decisions that improve your business.

24/7 Support

Remember that, while you are operating a business, you are also a customer of your accounting SaaS. You will eventually experience issues or have questions about your accounting software. 

Make sure that the software comes with adequate support for your business needs.

The 5 Best eCommerce Accounting Software of 2021

There are several choices of accounting software available. The best software is the one that helps you run your business smoothly. 

Take your time when determining which software is best for your business. It’s important to remember that the price isn’t the only important thing to consider when looking for software. You should also look at the features offered and ensure they fit your business’ needs.


Despite being more expensive than others on this list, QuickBooks is the best overall accounting software available for small businesses. QuickBooks comes with all of the important features you’re looking for in accounting software and routinely scores the highest reviews by industry experts and users alike. 

Pros of QuickBooks Accounting Software:

  • Excellent third-party integrations
  • Applies sales tax automatically using customer’s address
  • Files sales tax returns automatically
  • Easy-to-use interface
  • Many reporting features and templates are available
  • Incredible payroll support
  • Extensive order details
  • Sync product and inventory levels
  • Data syncs automatically daily

Cons of QuickBooks Accounting Software:

  • More expensive than other options
  • Advanced features are difficult to learn and use
  • Average customer support
  • Limited functionality for its mobile app


Although not as robust as QuickBooks, Xero is an excellent option as an alternative. Overall, it lacks some of QuickBooks’ premium features, but better pricing plans make up for this. 

The downside to Xero is that it lacks sales tax features. You can input the information manually, but doing so is time-consuming. However, using sales tax integration software alongside Xero helps to cover this issue.

Pros of Xero Accounting Software:

  • Excellent third party integrations
  • Above-average inventory accounting
  • Unlimited users in all pricing plans
  • Less expensive than QuickBooks
  • Highly customizable features
  • Easy-to-use interface
  • Project tracking options
  • Solid mobile app
  • Simplifies report preparing
  • Inventory and stock management
  • Bank reconciliation

Cons of Xero Accounting Software:

  • You must set up sales tax rates manually
  • Doesn’t file sales tax returns 
  • Limited customer support; only available via email


FreshBooks makes this list because it has the basic features you need for eCommerce accounting software. However, it lacks premium options. This software is best for a business just starting, has a small inventory, or has an eCommerce platform that already provides most of the features in the “what to look for…” section above.

Pros of FreshBooks Accounting Software:

  • Solid third party integration
  • Good customer service and support
  • Solid pricing options
  • Simple user interface
  • Set payment reminders
  • Credit card processing

Cons of FreshBooks Accounting Software:

  • Limited billable customers in each pricing plan
  • Below average reporting features
  • Limited inventory tracking
  • Does not determine sales tax rate by location

Sage Accounting

Although Sage Accounting is not the best on the market, the number of features available with its low price is enough to make this list. Sage’s great features help you keep your accounting records straight without more advanced features that you might not use or even need. 

Pros of Sage Accounting Software:

  • Excellent pricing options and deals
  • Very easy to set up 
  • Friendly interface
  • Project tracking 
  • Above-average mobile apps
  • Inventory and stock management
  • Bank reconciliation
  • Automatic billing
  • Electronic bill paying and paper printing options
  • Supplier management

Cons of Sage Accounting Software:

  • No time tracking feature
  • Older looking interface
  • Limited report customization
  • It runs slow online

Wave Accounting

The easiest way to sum up this accounting software is by stating that it’s free. ‘Free’ implies a lack of premium features offered by other software on this list, but you cannot beat the price. 

While Wave Accounting is not the most robust software, it comes with some abstract benefits. Because Wave is free, you gain experience with accounting software for no cost. This helps you determine which features your business needs and which features provide little value.

Pros of Wave Accounting:

  • Free forever
  • Some third-party integrations
  • Basic accounting features 
  • Double-entry accounting
  • Fantastic user interface
  • Support multiple currencies
  • Invoice and billing options
  • Payment tracking
  • Payroll and finance management
  • Receipts

Cons of Wave Accounting

  • No direct eCommerce integrations
  • Limited inventory accounting
  • It doesn’t determine sales tax rates
  • Doesn’t file sales tax returns 
  • Simple templates
  • Limited mobile app
  • Limited time tracking features
  • No customization to its 12 reporting types 

The Takeaway

Running an eCommerce business requires a lot of attention to detail, which is why using accounting software helps to make your life much easier. You should choose software that keeps your business stable and identifies potential issues between your business type and your accounting practices. Identifying these issues means you can solve them quickly and grow your business.

For other helpful tips on growing your eCommerce brand, visit Ampla.

No items found.
Latest news
What is Corporate Accounting?
Published on
November 29, 2021
What is Working Capital?
Published on
November 3, 2021